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Nucleotide Sequence (120 letters)

Query number:1
Query ID:Query_1
Definition line:No definition line
Length:120
Program:BLASTN 2.12.0+
Database:./db/nucleotide/Chinese_springv2.1_HC_and_LC_mrna.fasta

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence
Mouse-over to show defline and scores, click to show alignments
Color key for alignment scores
<40
40–50
50–80
80–200
200≤
query:
12
24
36
48
60
72
84
96
108
120

Descriptions

Sequences producing significant alignments:
Description Max score Total score Query cover E value Ident Accession
217.7 217.7 100% 8.931e-56 100% TraesCS1A03G0781200.3
217.7 217.7 100% 8.931e-56 100% TraesCS1A03G0781200.2
217.7 217.7 100% 8.931e-56 100% TraesCS1A03G0781200.1
208.7 208.7 100% 4.626e-53 98% TraesCS1D03G0748300.2
208.7 208.7 100% 4.626e-53 98% TraesCS1D03G0748300.1
190.6 190.6 100% 1.241e-47 95% TraesCS1B03G0896600.2
190.6 190.6 100% 1.241e-47 95% TraesCS1B03G0896600.1
34.6 34.6 22% 2.106 88% TraesCS1B03G1029000.1
33.7 33.7 19% 2.106 91% TraesCS4A03G0612300LC.1
33.7 33.7 23% 2.106 86% TraesCS5D03G1218400.2
33.7 33.7 23% 2.106 86% TraesCS5D03G1218400.1
33.7 33.7 15% 2.106 100% TraesCS4D03G0318700.1
33.7 33.7 15% 2.106 100% TraesCS4B03G0456000.4
33.7 33.7 15% 2.106 100% TraesCS4B03G0456000.3
33.7 33.7 15% 2.106 100% TraesCS4B03G0456000.2
33.7 33.7 25% 2.106 87% TraesCS2D03G1070500.1
33.7 33.7 19% 2.106 91% TraesCS1B03G0031600.1
32.8 32.8 17% 7.35 95% TraesCS1B03G1012900LC.1
32.8 32.8 21% 7.35 88% TraesCS6B03G0301300.1
31.9 31.9 18% 7.35 91% TraesCS4B03G0496600LC.1
31.9 31.9 18% 7.35 91% TraesCS4A03G0271300LC.1
31.9 31.9 20% 7.35 92% TraesCS2B03G1044700LC.1
31.9 31.9 14% 7.35 100% TraesCS5D03G0902700.1
31.9 31.9 14% 7.35 100% TraesCS5D03G0902600.1
31.9 31.9 14% 7.35 100% TraesCS5B03G0994600.2
31.9 31.9 14% 7.35 100% TraesCS5B03G0994600.1

Alignments

Descriptions

loc:chr1A(-)507787792-507792583 segs:1-879,880-970,971-1143,1144-1642,1643-1743,1744-1781,1782-1950,1951-2095,2096-2364 CDS=377-2740 loc:chr1A|507787792-507792583|- exons:507787792-507788459,507788557-507788701,507788823-507788991,507789331-507789368,507789453-507789553,507789654-507790152,507790241-507790413,507790583-507790673,507790753-507791671,507792248-507792583 segs:1-336,337-1255,1256-1346,1347-1519,1520-2018,2019-2119,2120-2157,2158-2326,2327-2471,2472-3139

Sequence ID: TraesCS1A03G0781200.3 Length: 3139 Number of Matches: 1

Range 1: 605 to 724 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
217.7 bits(240) 0.0 120/120(100%) 0/120(0%) +1/+1 
Query             1  TCGGCCGTTCATGGTAGTGAAACGATTGGTGGTGCGGAAGTTTGTGGGGGCACTATTTAC  60
                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Subject         605  TCGGCCGTTCATGGTAGTGAAACGATTGGTGGTGCGGAAGTTTGTGGGGGCACTATTTAC  664
Query            61  ACACCTTCTGATGATGTGCTGGCAGTTTCTTCTGTAGATAGGGTTTCACAAAATGACGAT  120
                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Subject         665  ACACCTTCTGATGATGTGCTGGCAGTTTCTTCTGTAGATAGGGTTTCACAAAATGACGAT  724
Descriptions

loc:chr1A(-)507787792-507792583 segs:1-879,880-970,971-1143,1144-1642,1643-1743,1744-1781,1782-1953,1954-2098,2099-2367 CDS=377-2743 loc:chr1A|507787792-507792583|- exons:507787792-507788459,507788557-507788701,507788823-507788994,507789331-507789368,507789453-507789553,507789654-507790152,507790241-507790413,507790583-507790673,507790753-507791671,507792248-507792583 segs:1-336,337-1255,1256-1346,1347-1519,1520-2018,2019-2119,2120-2157,2158-2329,2330-2474,2475-3142

Sequence ID: TraesCS1A03G0781200.2 Length: 3142 Number of Matches: 1

Range 1: 605 to 724 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
217.7 bits(240) 0.0 120/120(100%) 0/120(0%) +1/+1 
Query             1  TCGGCCGTTCATGGTAGTGAAACGATTGGTGGTGCGGAAGTTTGTGGGGGCACTATTTAC  60
                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Subject         605  TCGGCCGTTCATGGTAGTGAAACGATTGGTGGTGCGGAAGTTTGTGGGGGCACTATTTAC  664
Query            61  ACACCTTCTGATGATGTGCTGGCAGTTTCTTCTGTAGATAGGGTTTCACAAAATGACGAT  120
                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Subject         665  ACACCTTCTGATGATGTGCTGGCAGTTTCTTCTGTAGATAGGGTTTCACAAAATGACGAT  724
Descriptions

loc:chr1A(-)507787792-507792583 segs:1-879,880-970,971-1143,1144-1642,1643-1743,1744-1781,1782-1785 CDS=389-2173 loc:chr1A|507787792-507792583|- exons:507787792-507788459,507788557-507788701,507788823-507788950,507789331-507789368,507789453-507789553,507789654-507790152,507790241-507790413,507790583-507790673,507790753-507791683,507792248-507792583 segs:1-336,337-1267,1268-1358,1359-1531,1532-2030,2031-2131,2132-2169,2170-2297,2298-2442,2443-3110

Sequence ID: TraesCS1A03G0781200.1 Length: 3110 Number of Matches: 1

Range 1: 617 to 736 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
217.7 bits(240) 0.0 120/120(100%) 0/120(0%) +1/+1 
Query             1  TCGGCCGTTCATGGTAGTGAAACGATTGGTGGTGCGGAAGTTTGTGGGGGCACTATTTAC  60
                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Subject         617  TCGGCCGTTCATGGTAGTGAAACGATTGGTGGTGCGGAAGTTTGTGGGGGCACTATTTAC  676
Query            61  ACACCTTCTGATGATGTGCTGGCAGTTTCTTCTGTAGATAGGGTTTCACAAAATGACGAT  120
                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Subject         677  ACACCTTCTGATGATGTGCTGGCAGTTTCTTCTGTAGATAGGGTTTCACAAAATGACGAT  736
Descriptions

loc:chr1D(-)412735608-412740190 segs:1-882,883-973,974-1146,1147-1645,1646-1746,1747-1784,1785-1953,1954-2098,2099-2364 CDS=393-2756 loc:chr1D|412735608-412740190|- exons:412735608-412736136,412736227-412736371,412736490-412736658,412736992-412737029,412737114-412737214,412737315-412737813,412737902-412738074,412738245-412738335,412738415-412739336,412739839-412740190 segs:1-352,353-1274,1275-1365,1366-1538,1539-2037,2038-2138,2139-2176,2177-2345,2346-2490,2491-3019

Sequence ID: TraesCS1D03G0748300.2 Length: 3019 Number of Matches: 1

Range 1: 621 to 740 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
208.7 bits(230) 0.0 118/120(98%) 0/120(0%) +1/+1 
Query             1  TCGGCCGTTCATGGTAGTGAAACGATTGGTGGTGCGGAAGTTTGTGGGGGCACTATTTAC  60
                     |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Subject         621  TCGGCCGTTCTTGGTAGTGAAACGATTGGTGGTGCGGAAGCTTGTGGGGGCACTATTTAC  680
Query            61  ACACCTTCTGATGATGTGCTGGCAGTTTCTTCTGTAGATAGGGTTTCACAAAATGACGAT  120
                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Subject         681  ACACCTTCTGATGATGTGCTGGCAGTTTCTTCTGTAGATAGGGTTTCACAAAATGACGAT  740
Descriptions

loc:chr1D(-)412735269-412740190 segs:1-882,883-973,974-1146,1147-1645,1646-1746,1747-1784,1785-1956,1957-2101,2102-2367 CDS=405-2771 loc:chr1D|412735269-412740190|- exons:412735269-412735571,412735719-412736136,412736227-412736371,412736490-412736661,412736992-412737029,412737114-412737214,412737315-412737813,412737902-412738074,412738245-412738335,412738415-412739348,412739839-412740190 segs:1-352,353-1286,1287-1377,1378-1550,1551-2049,2050-2150,2151-2188,2189-2360,2361-2505,2506-2923,2924-3226

Sequence ID: TraesCS1D03G0748300.1 Length: 3226 Number of Matches: 1

Range 1: 633 to 752 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
208.7 bits(230) 0.0 118/120(98%) 0/120(0%) +1/+1 
Query             1  TCGGCCGTTCATGGTAGTGAAACGATTGGTGGTGCGGAAGTTTGTGGGGGCACTATTTAC  60
                     |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Subject         633  TCGGCCGTTCTTGGTAGTGAAACGATTGGTGGTGCGGAAGCTTGTGGGGGCACTATTTAC  692
Query            61  ACACCTTCTGATGATGTGCTGGCAGTTTCTTCTGTAGATAGGGTTTCACAAAATGACGAT  120
                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Subject         693  ACACCTTCTGATGATGTGCTGGCAGTTTCTTCTGTAGATAGGGTTTCACAAAATGACGAT  752
Descriptions

loc:chr1B(-)559716374-559721353 segs:1-882,883-973,974-1146,1147-1645,1646-1746,1747-1784,1785-1956,1957-2101,2102-2367 CDS=446-2812 loc:chr1B|559716374-559721353|- exons:559716374-559716599,559716740-559717145,559717243-559717387,559717589-559717760,559718092-559718129,559718214-559718314,559718415-559718913,559719002-559719174,559719344-559719434,559719515-559720436,559720949-559721353 segs:1-405,406-1327,1328-1418,1419-1591,1592-2090,2091-2191,2192-2229,2230-2401,2402-2546,2547-2952,2953-3178

Sequence ID: TraesCS1B03G0896600.2 Length: 3178 Number of Matches: 1

Range 1: 674 to 793 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
190.6 bits(210) 0.0 114/120(95%) 0/120(0%) +1/+1 
Query             1  TCGGCCGTTCATGGTAGTGAAACGATTGGTGGTGCGGAAGTTTGTGGGGGCACTATTTAC  60
                     ||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||
Subject         674  TCGACCGTTCTTGGTAGTGAAACGATTGGTGGTGCGGAAGCTTGTGGGGGCACTCTTTAC  733
Query            61  ACACCTTCTGATGATGTGCTGGCAGTTTCTTCTGTAGATAGGGTTTCACAAAATGACGAT  120
                     ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Subject         734  ACACCTTCTGATGATGTGCTGACAGTTTCTTCTGTAGATAGGGTTTCACAAGATGACGAT  793
Descriptions

loc:chr1B(-)559716374-559721353 segs:1-882,883-973,974-1146,1147-1645,1646-1746,1747-1784,1785-1953,1954-2098,2099-2364 CDS=446-2809 loc:chr1B|559716374-559721353|- exons:559716374-559716599,559716740-559717145,559717243-559717387,559717589-559717757,559718092-559718129,559718214-559718314,559718415-559718913,559719002-559719174,559719344-559719434,559719515-559720436,559720949-559721353 segs:1-405,406-1327,1328-1418,1419-1591,1592-2090,2091-2191,2192-2229,2230-2398,2399-2543,2544-2949,2950-3175

Sequence ID: TraesCS1B03G0896600.1 Length: 3175 Number of Matches: 1

Range 1: 674 to 793 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
190.6 bits(210) 0.0 114/120(95%) 0/120(0%) +1/+1 
Query             1  TCGGCCGTTCATGGTAGTGAAACGATTGGTGGTGCGGAAGTTTGTGGGGGCACTATTTAC  60
                     ||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||
Subject         674  TCGACCGTTCTTGGTAGTGAAACGATTGGTGGTGCGGAAGCTTGTGGGGGCACTCTTTAC  733
Query            61  ACACCTTCTGATGATGTGCTGGCAGTTTCTTCTGTAGATAGGGTTTCACAAAATGACGAT  120
                     ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Subject         734  ACACCTTCTGATGATGTGCTGACAGTTTCTTCTGTAGATAGGGTTTCACAAGATGACGAT  793
Descriptions

loc:chr1B(+)617117987-617158723 segs:1-372,373-583,584-824,825-969,970-1362,1363-1564,1565-1814,1815-1968,1969-2238,2239-2305,2306-3186 CDS=94-3279 loc:chr1B|617117987-617158723|+ exons:617117987-617118451,617128840-617129050,617135591-617135831,617138280-617138424,617138921-617139313,617139474-617139675,617140487-617140736,617141395-617141548,617154783-617155052,617155165-617155231,617157638-617158723 segs:1-465,466-676,677-917,918-1062,1063-1455,1456-1657,1658-1907,1908-2061,2062-2331,2332-2398,2399-3484

Sequence ID: TraesCS1B03G1029000.1 Length: 3484 Number of Matches: 1

Range 1: 2821 to 2846 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
34.6 bits(37) 2.1 23/26(88%) 0/26(0%) +1/+1 
Query            58  TACACACCTTCTGATGATGTGCTGGC  83
                     |||||||||||||||||  ||| |||
Subject        2821  TACACACCTTCTGATGAATTGCAGGC  2846
Descriptions

loc:chr4A(+)539102385-539103044 segs:1-660 CDS=1-660 loc:chr4A|539102385-539103044|+ exons:539102385-539103044 segs:1-660

Sequence ID: TraesCS4A03G0612300LC.1 Length: 660 Number of Matches: 1

Range 1: 128 to 106 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
33.7 bits(36) 2.1 21/23(91%) 0/23(0%) +1/-1 
Query            69  TGATGATGTGCTGGCAGTTTCTT  91
                     ||||| |||| ||||||||||||
Subject         128  TGATGGTGTGGTGGCAGTTTCTT  106
Descriptions

loc:chr5D(-)565206457-565217222 segs:1-183,184-246,247-324,325-416,417-519,520-672,673-1328,1329-1815,1816-2303,2304-3102,3103-3793,3794-4830,4831-5301,5302-5760 CDS=1-5760 loc:chr5D|565206457-565217222|- exons:565206457-565207237,565207367-565207837,565207962-565208998,565209095-565209785,565210176-565210974,565211131-565211618,565212444-565212930,565213030-565213685,565214581-565214733,565215578-565215680,565216090-565216181,565216635-565216712,565216815-565216877,565217040-565217222 segs:1-183,184-246,247-324,325-416,417-519,520-672,673-1328,1329-1815,1816-2303,2304-3102,3103-3793,3794-4830,4831-5301,5302-6082

Sequence ID: TraesCS5D03G1218400.2 Length: 6082 Number of Matches: 1

Range 1: 3103 to 3076 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
33.7 bits(36) 2.1 24/28(86%) 0/28(0%) +1/-1 
Query            83  CAGTTTCTTCTGTAGATAGGGTTTCACA  110
                     |||||||||||||||  || | ||||||
Subject        3103  CAGTTTCTTCTGTAGCAAGCGGTTCACA  3076
Descriptions

loc:chr5D(-)565206457-565216115 segs:1-26,27-129,130-282,283-938,939-1425,1426-1913,1914-2712,2713-3196,3197-3316,3317-4353,4354-4824,4825-5283 CDS=1-5283 loc:chr5D|565206457-565216115|- exons:565206457-565207237,565207367-565207837,565207962-565208998,565209095-565209214,565209302-565209785,565210176-565210974,565211131-565211618,565212444-565212930,565213030-565213685,565214581-565214733,565215578-565215680,565216090-565216115 segs:1-26,27-129,130-282,283-938,939-1425,1426-1913,1914-2712,2713-3196,3197-3316,3317-4353,4354-4824,4825-5605

Sequence ID: TraesCS5D03G1218400.1 Length: 5605 Number of Matches: 1

Range 1: 2713 to 2686 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
33.7 bits(36) 2.1 24/28(86%) 0/28(0%) +1/-1 
Query            83  CAGTTTCTTCTGTAGATAGGGTTTCACA  110
                     |||||||||||||||  || | ||||||
Subject        2713  CAGTTTCTTCTGTAGCAAGCGGTTCACA  2686
Descriptions

loc:chr4D(-)159167348-159180052 segs:1-197,198-236,237-385,386-461,462-753,754-860,861-908,909-1112,1113-1214,1215-1342,1343-1469,1470-1568,1569-1593 CDS=108-1700 loc:chr4D|159167348-159180052|- exons:159167348-159167589,159167663-159167761,159167924-159168050,159168162-159168289,159169598-159169699,159170359-159170562,159170648-159170695,159170802-159170908,159170982-159171273,159178041-159178116,159178292-159178440,159178511-159178549,159179749-159180052 segs:1-304,305-343,344-492,493-568,569-860,861-967,968-1015,1016-1219,1220-1321,1322-1449,1450-1576,1577-1675,1676-1917

Sequence ID: TraesCS4D03G0318700.1 Length: 1917 Number of Matches: 1

Range 1: 1332 to 1315 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
33.7 bits(36) 2.1 18/18(100%) 0/18(0%) +1/-1 
Query            68  CTGATGATGTGCTGGCAG  85
                     ||||||||||||||||||
Subject        1332  CTGATGATGTGCTGGCAG  1315
Descriptions

loc:chr4B(-)342226404-342233517 segs:1-197,198-236,237-385,386-461,462-750,751-857,858-905,906-1109,1110-1211,1212-1339,1340-1466,1467-1592,1593-1617 CDS=209-1825 loc:chr4B|342226404-342233517|- exons:342226404-342226623,342226697-342226822,342226958-342227084,342227196-342227323,342228602-342228703,342229362-342229565,342229646-342229693,342229798-342229904,342229978-342230266,342231339-342231414,342231590-342231738,342231809-342231847,342233113-342233517 segs:1-405,406-444,445-593,594-669,670-958,959-1065,1066-1113,1114-1317,1318-1419,1420-1547,1548-1674,1675-1800,1801-2020

Sequence ID: TraesCS4B03G0456000.4 Length: 2020 Number of Matches: 1

Range 1: 1430 to 1413 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
33.7 bits(36) 2.1 18/18(100%) 0/18(0%) +1/-1 
Query            68  CTGATGATGTGCTGGCAG  85
                     ||||||||||||||||||
Subject        1430  CTGATGATGTGCTGGCAG  1413
Descriptions

loc:chr4B(-)342226404-342233517 segs:1-197,198-236,237-385,386-461,462-750,751-857,858-905,906-1109,1110-1211,1212-1339,1340-1466,1467-1565,1566-1590 CDS=209-1798 loc:chr4B|342226404-342233517|- exons:342226404-342226623,342226697-342226795,342226958-342227084,342227196-342227323,342228602-342228703,342229362-342229565,342229646-342229693,342229798-342229904,342229978-342230266,342231339-342231414,342231590-342231738,342231809-342231847,342233113-342233517 segs:1-405,406-444,445-593,594-669,670-958,959-1065,1066-1113,1114-1317,1318-1419,1420-1547,1548-1674,1675-1773,1774-1993

Sequence ID: TraesCS4B03G0456000.3 Length: 1993 Number of Matches: 1

Range 1: 1430 to 1413 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
33.7 bits(36) 2.1 18/18(100%) 0/18(0%) +1/-1 
Query            68  CTGATGATGTGCTGGCAG  85
                     ||||||||||||||||||
Subject        1430  CTGATGATGTGCTGGCAG  1413
Descriptions

loc:chr4B(-)342226404-342233517 segs:1-197,198-236,237-343,344-419,420-708,709-815,816-863,864-1067,1068-1169,1170-1297,1298-1424,1425-1523,1524-1548 CDS=209-1756 loc:chr4B|342226404-342233517|- exons:342226404-342226623,342226697-342226795,342226958-342227084,342227196-342227323,342228602-342228703,342229362-342229565,342229646-342229693,342229798-342229904,342229978-342230266,342231339-342231414,342231590-342231696,342231809-342231847,342233113-342233517 segs:1-405,406-444,445-551,552-627,628-916,917-1023,1024-1071,1072-1275,1276-1377,1378-1505,1506-1632,1633-1731,1732-1951

Sequence ID: TraesCS4B03G0456000.2 Length: 1951 Number of Matches: 1

Range 1: 1388 to 1371 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
33.7 bits(36) 2.1 18/18(100%) 0/18(0%) +1/-1 
Query            68  CTGATGATGTGCTGGCAG  85
                     ||||||||||||||||||
Subject        1388  CTGATGATGTGCTGGCAG  1371
Descriptions

loc:chr2D(+)583198804-583203362 segs:1-2703 CDS=394-3096 loc:chr2D|583198804-583203362|+ exons:583198804-583199028,583199139-583199223,583199382-583199459,583200330-583203362 segs:1-225,226-310,311-388,389-3421

Sequence ID: TraesCS2D03G1070500.1 Length: 3421 Number of Matches: 1

Range 1: 1403 to 1432 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
33.7 bits(36) 2.1 26/30(87%) 1/30(3%) +1/+1 
Query            88  TCTTCTGTAGATAGG-GTTTCACAAAATGA  117
                     ||||||||||| |||  |||||||| ||||
Subject        1403  TCTTCTGTAGAAAGGCTTTTCACAACATGA  1432
Descriptions

loc:chr1B(-)8015274-8016638 segs:1-1365 CDS=1-1365 loc:chr1B|8015274-8016638|- exons:8015274-8016638 segs:1-1365

Sequence ID: TraesCS1B03G0031600.1 Length: 1365 Number of Matches: 1

Range 1: 534 to 512 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
33.7 bits(36) 2.1 21/23(91%) 0/23(0%) +1/-1 
Query            72  TGATGTGCTGGCAGTTTCTTCTG  94
                     ||||||||||||| |||||| ||
Subject         534  TGATGTGCTGGCAATTTCTTGTG  512
Descriptions

loc:chr1B(-)608738005-608739017 segs:1-93,94-186,187-285,286-588 CDS=139-726 loc:chr1B|608738005-608739017|- exons:608738005-608738308,608738414-608738512,608738623-608738715,608738787-608739017 segs:1-231,232-324,325-423,424-727

Sequence ID: TraesCS1B03G1012900LC.1 Length: 727 Number of Matches: 1

Range 1: 129 to 110 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
32.8 bits(35) 7.4 19/20(95%) 0/20(0%) +1/-1 
Query           101  GGGTTTCACAAAATGACGAT  120
                     ||||||||||||||| ||||
Subject         129  GGGTTTCACAAAATGCCGAT  110
Descriptions

loc:chr6B(+)121861936-121863712 segs:1-330,331-621 CDS=103-723 loc:chr6B|121861936-121863712|+ exons:121861936-121862029,121862185-121862522,121862637-121862950,121863409-121863712 segs:1-94,95-432,433-746,747-1050

Sequence ID: TraesCS6B03G0301300.1 Length: 1050 Number of Matches: 1

Range 1: 164 to 188 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
32.8 bits(35) 7.4 22/25(88%) 0/25(0%) +1/+1 
Query            30  TGGTGCGGAAGTTTGTGGGGGCACT  54
                     ||||| |||||  ||||||||||||
Subject         164  TGGTGAGGAAGGCTGTGGGGGCACT  188
Descriptions

loc:chr4B(-)386010791-386011301 segs:1-351 CDS=1-351 loc:chr4B|386010791-386011301|- exons:386010791-386011301 segs:1-511

Sequence ID: TraesCS4B03G0496600LC.1 Length: 511 Number of Matches: 1

Range 1: 63 to 84 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
31.9 bits(34) 7.4 20/22(91%) 0/22(0%) +1/+1 
Query            66  TTCTGATGATGTGCTGGCAGTT  87
                     ||||||||||||| |||| |||
Subject          63  TTCTGATGATGTGTTGGCTGTT  84
Descriptions

loc:chr4A(+)165062640-165063059 segs:1-420 CDS=1-420 loc:chr4A|165062640-165063059|+ exons:165062640-165063059 segs:1-420

Sequence ID: TraesCS4A03G0271300LC.1 Length: 420 Number of Matches: 1

Range 1: 156 to 177 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
31.9 bits(34) 7.4 20/22(91%) 0/22(0%) +1/+1 
Query            66  TTCTGATGATGTGCTGGCAGTT  87
                     ||||||||||||| |||| |||
Subject         156  TTCTGATGATGTGTTGGCTGTT  177
Descriptions

loc:chr2B(-)591986364-591986937 segs:1-249,250-336,337-441 CDS=1-441 loc:chr2B|591986364-591986937|- exons:591986364-591986468,591986564-591986650,591986689-591986937 segs:1-249,250-336,337-441

Sequence ID: TraesCS2B03G1044700LC.1 Length: 441 Number of Matches: 1

Range 1: 143 to 166 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
31.9 bits(34) 7.4 22/24(92%) 1/24(4%) +1/+1 
Query            65  CTTCTGATGATGTGCT-GGCAGTT  88
                     |||||||||||||||| |||| ||
Subject         143  CTTCTGATGATGTGCTAGGCACTT  166
Descriptions

loc:chr5D(+)473594784-473603318 segs:1-509,510-939,940-1564,1565-1605,1606-1674,1675-1775,1776-1854,1855-1953,1954-2022,2023-2072,2073-2154,2155-2249,2250-2388 CDS=99-2486 loc:chr5D|473594784-473603318|+ exons:473594784-473595390,473596318-473596747,473596881-473597505,473597815-473597855,473597937-473598005,473598375-473598475,473600501-473600579,473601327-473601425,473601487-473601555,473601688-473601737,473601825-473601906,473602476-473602570,473602659-473602877,473603087-473603318 segs:1-607,608-1037,1038-1662,1663-1703,1704-1772,1773-1873,1874-1952,1953-2051,2052-2120,2121-2170,2171-2252,2253-2347,2348-2566,2567-2798

Sequence ID: TraesCS5D03G0902700.1 Length: 2798 Number of Matches: 1

Range 1: 1273 to 1289 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
31.9 bits(34) 7.4 17/17(100%) 0/17(0%) +1/+1 
Query            99  TAGGGTTTCACAAAATG  115
                     |||||||||||||||||
Subject        1273  TAGGGTTTCACAAAATG  1289
Descriptions

loc:chr5D(+)473327540-473336542 segs:1-317,318-747,748-1354,1355-1395,1396-1464,1465-1565,1566-1644,1645-1737 CDS=1-1737 loc:chr5D|473327540-473336542|+ exons:473327540-473327856,473328976-473329405,473329538-473330144,473331705-473331745,473331828-473331896,473332237-473332337,473335458-473335536,473336450-473336542 segs:1-317,318-747,748-1354,1355-1395,1396-1464,1465-1565,1566-1644,1645-1737

Sequence ID: TraesCS5D03G0902600.1 Length: 1737 Number of Matches: 1

Range 1: 983 to 999 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
31.9 bits(34) 7.4 17/17(100%) 0/17(0%) +1/+1 
Query            99  TAGGGTTTCACAAAATG  115
                     |||||||||||||||||
Subject         983  TAGGGTTTCACAAAATG  999
Descriptions

loc:chr5B(+)581396880-581404833 segs:1-530,531-960,961-1585,1586-1626,1627-1695,1696-1796,1797-1875,1876-1974,1975-2043,2044-2093,2094-2175,2176-2270,2271-2409 CDS=9-2417 loc:chr5B|581396880-581404833|+ exons:581396880-581397417,581398345-581398774,581398908-581399532,581399841-581399881,581399962-581400030,581400400-581400500,581402188-581402266,581403012-581403110,581403172-581403240,581403373-581403422,581403510-581403591,581404161-581404255,581404338-581404833 segs:1-538,539-968,969-1593,1594-1634,1635-1703,1704-1804,1805-1883,1884-1982,1983-2051,2052-2101,2102-2183,2184-2278,2279-2774

Sequence ID: TraesCS5B03G0994600.2 Length: 2774 Number of Matches: 1

Range 1: 1204 to 1220 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
31.9 bits(34) 7.4 17/17(100%) 0/17(0%) +1/+1 
Query            99  TAGGGTTTCACAAAATG  115
                     |||||||||||||||||
Subject        1204  TAGGGTTTCACAAAATG  1220
Descriptions

loc:chr5B(+)581396880-581401464 segs:1-410,411-840,841-1465,1466-1506,1507-1575,1576-1676,1677-1680 CDS=129-1808 loc:chr5B|581396880-581401464|+ exons:581396880-581397417,581398345-581398774,581398908-581399532,581399841-581399881,581399962-581400030,581400400-581400500,581401461-581401464 segs:1-538,539-968,969-1593,1594-1634,1635-1703,1704-1804,1805-1808

Sequence ID: TraesCS5B03G0994600.1 Length: 1808 Number of Matches: 1

Range 1: 1204 to 1220 Gene details (IWGSC gene id only) DownloadSequence

ScoreExpectIdentitiesGapsStrand
31.9 bits(34) 7.4 17/17(100%) 0/17(0%) +1/+1 
Query            99  TAGGGTTTCACAAAATG  115
                     |||||||||||||||||
Subject        1204  TAGGGTTTCACAAAATG  1220