WheatOmics 2.0 · Analysis tool

Sequence Toolkit

The Sequence Manipulation Suite (SMS2): 60+ browser-side tools for DNA, RNA and protein sequences — convert formats, filter and extract regions, analyse composition, align sequences, design and check primers, and more.

60+ tools DNA · RNA · protein Runs in the browser

Convert & extract

Combine FASTA
EMBL to FASTA
EMBL Feature Extractor
EMBL Trans Extractor
Filter DNA
Filter Protein
GenBank to FASTA
GenBank Feature Extractor
GenBank Trans Extractor
One to Three
Range Extractor DNA
Range Extractor Protein
Reverse Complement
Split Codons
Split FASTA
Three to One
Window Extractor DNA
Window Extractor Protein

DNA analysis

Codon Plot
Codon Usage
CpG Islands
DNA Molecular Weight
DNA Pattern Find
DNA Stats
Fuzzy Search DNA
Fuzzy Search Protein
Ident and Sim
Multi Rev Trans
Mutate for Digest
ORF Finder
Pairwise Align Codons

Alignment & protein

Pairwise Align DNA
Pairwise Align Protein
PCR Primer Stats
PCR Products
Protein GRAVY
Protein Isoelectric Point
Protein Molecular Weight
Protein Pattern Find
Protein Stats

Restriction, translation & PCR

Restriction Digest
Restriction Summary
Reverse Translate
Translate

Visualise & manipulate

Color Align Conservation
Color Align Properties
Group DNA
Group Protein
Primer Map
Restriction Map
Translation Map
Mutate DNA
Mutate Protein
Random Coding DNA
Random DNA Sequence
Random DNA Regions
Random Protein Sequence
Random Protein Regions
Sample DNA
Sample Protein
Shuffle DNA
Shuffle Protein

Reference & about

IUPAC codes
Genetic codes
Browser compatibility
Mirror this site
About this site
Acknowledgments
Reference

The Sequence Manipulation Suite was written by Paul Stothard and is distributed under the reference terms. Utilities: about · reference · browser compatibility · mirror / off-line use · previous version · feedback to stothard@ualberta.ca.