Genes in the row were homologous to each others among different genomes or species.

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This webtool used the MCscan (python-version) in 'jcvi'. Haibao Tang et al. (2015). jcvi: JCVI utility libraries. Zenodo. 10.5281/zenodo.31631

If you use wild emmer genome, please cite:
Avni, R., Nave, M., Barad, O., Baruch, K., Twardziok, S.O., Gundlach, H., et al. (2017). Wild emmer genome architecture and diversity elucidate wheat evolution and domestication. Science 357(6346), 93-97.
doi: 10.1126/science.aan0032

If you use qingke genome, please cite:
Dai, F., Wang, X., Zhang, X.Q., Chen, Z., Nevo, E., Jin, G., et al. (2018). Assembly and analysis of a qingke reference genome demonstrate its close genetic relation to modern cultivated barley. Plant Biotechnol J 16(3), 760-770.
doi: 10.1111/pbi.12826

If you use Chinese Spring genome (labeling with IWGSC1.0), please cite:
International Wheat Genome Sequencing, C., investigators, I.R.p., Appels, R., Eversole, K., Feuillet, C., Keller, B., et al. (2018). Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science 361(6403).
doi: 10.1126/science.aar7191

If you use Triticum urartu genome, please cite:
Ling, H.Q., Ma, B., Shi, X., Liu, H., Dong, L., Sun, H., et al. (2018). Genome sequence of the progenitor of wheat A subgenome Triticum urartu. Nature 557(7705), 424-428.
doi: 10.1038/s41586-018-0108-0

If you use Aegilops tauschii genome, please cite:
Luo, M.C., Gu, Y.Q., Puiu, D., Wang, H., Twardziok, S.O., Deal, K.R., et al. (2017). Genome sequence of the progenitor of the wheat D genome Aegilops tauschii. Nature 551(7681), 498-502.
doi: 10.1038/nature24486

If you use Durum wheat genome, please cite:
Maccaferri, M., Harris, N.S., Twardziok, S.O., Pasam, R.K., Gundlach, H., Spannagl, M., et al. (2019). Durum wheat genome highlights past domestication signatures and future improvement targets. Nat Genet 51(5), 885-895.
doi: 10.1038/s41588-019-0381-3

If you use barley genome, please cite:
Mascher, M., Gundlach, H., Himmelbach, A., Beier, S., Twardziok, S.O., Wicker, T., et al. (2017). A chromosome conformation capture ordered sequence of the barley genome. Nature 544(7651), 427-433.
doi: 10.1038/nature22043

If you use wild emmer genome V2, gene and protein sequences, please cite:
Zhu, T., Wang, L., Rodriguez, J.C., Deal, K.R., Avni, R., Distelfeld, A., et al. (2019). Improved Genome Sequence of Wild Emmer Wheat Zavitan with the Aid of Optical Maps. G3 (Bethesda) 9(3), 619-624.
doi: 10.1534/g3.118.200902

For more information and any question, please contact : WheatOmics