WheatOmics 2.0 · Resources

External Links

A curated gateway to wheat and Triticeae databases, comparative genomics resources, expression atlases and breeding tools maintained by the wider community.

16 resources Wheat · Triticeae · Tools

Community resources, databases and tools related to WheatOmics.

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AutoCloner

AutoCloner is a custom pipeline that designs homeologue-specific primers for polyploids. It achieves this by extracting SNP locations unique to your gene of interest, and placing the 3` ends of primers at these SNPs

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PaperBLAST

PaperBLAST builds a database of protein sequences that are linked to scientific articles. These links come from automated text searches against the articles in EuropePMC and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot, BRENDA, CAZy (as made available by dbCAN), CharProtDB, MetaCyc, EcoCyc, TCDB, REBASE, and the Fitness Browser. Given this database and a protein sequence query, PaperBLAST uses protein-protein BLAST to find similar sequences with E < 0.001.

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GrainGenes

GrainGenes, a database for Triticeae and Avena, is a comprehensive resource for molecular and phenotypic information for wheat, barley, rye, and other related species, including oat.

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T3/wheat

T3 is a repository for public wheat data generated by the Wheat Coordinated Agricultural Project (Wheat CAP).

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Triti-Map

Utility of Triti-Map for bulk-segregated mapping of causal genes and regulatory elements in Triticeae.

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WheatPro

WheatPro can perform online multidimensional analysis of gene expression, such as transcriptional regulation, gene co-expression, multi-omics expression, modification sites, PTC analysis, PPI analysis of genes regulating important agronomic traits (disease resistance, quality), and ABD expression preference analysis.

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