WheatOmics 2.0 · Resources

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Genome assemblies, transcript sets, co-expression tables, 660K genotype data and JBrowse track documentation — everything behind the WheatOmics analyses.

Genomes from published assemblies TACO transcripts 660K genotypes

1. Genome sequences

All genomes were downloaded from published papers; you can get them from the NCBI Assembly database. The published papers are also listed in the BLAST, GetSequence, PrimerServer 2 and JBrowse pages.

2. Transcripts generated from published data

We downloaded the published transcriptome data from the NCBI SRA database, mapped reads to the Chinese Spring genome, and merged the assemblies with the TACO pipeline. The resulting transcript sequences are available as TACOv1.tar.gz with password 1q6k.

4. Co-expression tables

The co-expression tables (wheat grain and multiple tissues) can be downloaded here with password wuw3.

3. Omics data in JBrowse

Open the JBrowse gateway and read the "About this track" panel for details of each track. Contact us at shengweima@icloud.com if you have a question about the JBrowse data.

Where to find the 'About this track' panel in JBrowse

The order information for the EMS mutants (Jimai 22 and Cadenza/Kronos) is available by right-clicking the mutation.

Right-click menu of an EMS mutation in JBrowse

5. Wheat 660K genotype for 343 common wheat accessions

The genotype data can be downloaded here with password vn7m.