WheatOmics 2.0 · Gene family tool

PfamSearch

Find every wheat gene annotated with a PFAM domain, with chromosomal positions, strand, description and a downloadable table.

PFAM domain search Multi-genome annotations TSV / CSV export

Genome / Annotation Table

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Only tables with a Domain column support PFAM search.

PFAM Domain ID Must start with "PF". Exact match only — PF0031 will also match PF00319 etc. (regex search).

About PfamSearch: This tool searches all wheat genes annotated with a specific PFAM domain. Results include chromosomal positions (in Mb), strand orientation, gene ID, functional description, and domain ID. The database (Genefuncdb) uses regular expression matching on the Domain field, so PF0031 will match PF00310, PF00319, PF003100 etc.

Corresponding to: protein family search (original CGI version)

Examples

PF00319 — SRF-type transcription factor (MADS-box)
PF00830 — Ribosomal protein L14p/L23e
PF00931 — NB-ARC domain (disease resistance)
PF00203 — Ribosomal protein S19
PF05699 — DUF820
PF03018 — Dirigent protein
PF07160 — DUF1393
PF02182 — SAD1/UNC-like domain

Searching PFAM domain...